01 - Preheat oven to 400°F. Line a baking sheet with parchment paper or aluminum foil.
02 - In a medium mixing bowl, whisk together the chipotle peppers, honey, olive oil, apple cider vinegar, minced garlic, smoked paprika, kosher salt, and black pepper until smooth and well combined.
03 - Pat the chicken thighs dry with paper towels and arrange them on the prepared baking sheet.
04 - Brush the chipotle honey sauce generously over each chicken thigh, ensuring even coating. Reserve about 2 tablespoons of the sauce for glazing later.
05 - Bake the chicken thighs for 30 minutes, until the juices run clear and the skin is golden brown.
06 - Remove the baking sheet from the oven. Brush the chicken with the reserved sauce and sprinkle shredded smoked Gouda evenly over each thigh.
07 - Return to the oven for 5 minutes, or until the cheese is fully melted and bubbling.
08 - Garnish with fresh cilantro and serve with lime wedges on the side.